Full citations and indices can be found on my Google Scholar page
Current indices: H-index 29
2019
- GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions; MR Farhat, L Freschi, R Calderon, T Ioerger, M Snyder, CJ Meehan, …; Nature communications; 10 (1), 2128; 2019
- Mycobacterium ulcerans population genomics to inform on the spread of Buruli ulcer across central Africa; K Vandelannoote, DM Phanzu, K Kibadi, M Eddyani, CJ Meehan, …; mSphere; 4 (1), e00472-18; 2019
- A genome-based species taxonomy of the Lactobacillus Genus Complex; S Wittouck, S Wuyts, CJ Meehan, V van Noort, S Lebeer; bioRxiv; 537084; 2019
- Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues; CJ Meehan, GA Goig, TA Kohl, L Verboven, A Dippenaar, M Ezewudo, …; Nature Reviews Microbiology; 1; 2019
- Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium; E Tortoli, CJ Meehan, A Grottola, GF Serpini, A Fabio, A Trovato, …; Infection, Genetics and Evolution; 75, 103983; 2019
- Ethical Considerations for Movement Mapping to Identify Disease Transmission Hotspots.; BC de Jong, BM Gaye, J Luyten, B van Buitenen, E Andr√©, CJ Meehan, …; Emerging infectious diseases; ; 2019
- Storage of Sputum in Cetylpyridinium Chloride, OMNIgene. SPUTUM, and Ethanol Is Compatible with Molecular Tuberculosis Diagnostic Testing; CND Sanoussi, BC de Jong, D Affolabi, CJ Meehan, M Odoun, L Rigouts; Journal of clinical microbiology; 57 (7), e00275-19; 2019
- Superimposing incident sexually transmitted infections on HIV phylogram to investigate possible misclassification of men who have sex with men as heterosexuals in a cohort in Antwerp, Belgium.; KK Osbak, CJ Meehan, S G Ribas, L Heyndrickx, KK Ari√´n, …; International Journal of STD & AIDS; 9.56462E+14; 2019
- The global phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia; MI Gr√∂schel, CJ Meehan, I Barilar, M Diricks, A Gonzaga, M Steglich, …; bioRxiv; 748954; 2019
- Bridging the TB data gap: in silico extraction of rifampicin-resistant tuberculosis diagnostic test results from whole genome sequence data; KCS Ng, JCS Ngabonziza, P Lempens, BC de Jong, F van Leth, …; bioRxiv; 628099; 2019
2018
- Comparative genomics shows that Mycobacterium ulcerans migration and expansion preceded the rise of buruli ulcer in Southeastern Australia; AH Buultjens, K Vandelannoote, CJ Meehan, M Eddyani, BC de Jong, …; Appl. Environ. Microbiol.; 84 (8), e02612-17; 2018
- The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology; CJ Meehan, P Moris, TA Kohl, J Peƒçerska, S Akter, M Merker, C Utpatel, …; EBioMedicine; 37, 410-416; 2018
- Xpert Ultra can unambiguously identify specific rifampicin resistance-conferring mutations; KCS Ng, A van Deun, CJ Meehan, G Torrea, M Driesen, S Gabri√´ls, …; Journal of clinical microbiology, JCM.; 00686-18; 2018
- Isoniazid resistance levels of Mycobacterium tuberculosis can largely be predicted by high-confidence resistance-conferring mutations; P Lempens, CJ Meehan, K Vandelannoote, K Fissette, P de Rijk, …; Scientific reports; 8 (1), 3246; 2018
- The repetitive element RLEP is a highly specific target for detection of Mycobacterium leprae; S Braet, K Vandelannoote, CJ Meehan, ANB Fontes, E Hasker, PS Rosa, …; Journal of clinical microbiology; 56 (3), e01924-17; 2018
- Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches; ID Otchere, M Coscoll√°, L S√°nchez-Bus√≥, A Asante-Poku, D Brites, …; Scientific reports; 8 (1), 11269; 2018
- Potential application of digitally linked tuberculosis diagnostics for real-time surveillance of drug-resistant tuberculosis transmission: validation and analysis of test results; KC Ng, CJ Meehan, G Torrea, L Goeminne, M Diels, L Rigouts, …; JMIR medical informatics; 6 (1), e12; 2018
- Candidate Treponema pallidum biomarkers uncovered in urine from individuals with syphilis using mass spectrometry; KK Osbak, GA Van Raemdonck, M Dom, CE Cameron, CJ Meehan, …; Future microbiology; 13 (13), 1497-1510; 2018
- Whole genome sequence of Mycobacterium kansasii isolates of the genotype 1 from Brazilian patients with pulmonary disease demonstrates considerable heterogeneity; E Machado, SEG Vasconcellos, C Cerdeira, LL Gomes, R Junqueira, …; Mem Inst Oswaldo Cruz.; 113 (9); 2018
2017
- Genomic characterization of Nontuberculous Mycobacteria; T Fedrizzi, CJ Meehan, A Grottola, E Giacobazzi, GF Serpini, …; Scientific Reports; 7; 2017
- Modulation of aneuploidy in Leishmania donovani during adaptation to different in vitro and in vivo environments and its impact on gene expression; F Dumetz, H Imamura, M Sanders, V Seblova, J Myskova, P Pescher, …; mBio; 8 (3), e00599-17; 2017
- The new phylogeny of the genus Mycobacterium: the old and the news; E Tortoli, T Fedrizzi, CJ Meehan*, A Trovato, A Grottola, E Giacobazzi, …; Infection, Genetics and Evolution; 56, 19-25; 2017
- Multiple Introductions and Recent Spread of the Emerging Human Pathogen Mycobacterium ulcerans across Africa; K Vandelannoote, CJ Meehan, M Eddyani, D Affolabi, DM Phanzu, …; Genome biology and evolution; 9 (3), 414-426; 2017
- Genome-Wide SNP Analysis Reveals Distinct Origins of Trypanosoma evansi and Trypanosoma equiperdum; B Cuypers, F Van den Broeck, N Van Reet, CJ Meehan, J Cauchard, …; Genome biology and evolution; 9 (8), 1990-1997; 2017
- The predominance of Ethiopian specific Mycobacterium tuberculosis families and minimal contribution of Mycobacterium bovis in tuberculous lymphadenitis patients in Southwest Ethiopia.; M Tadesse, G Abebe, A Bekele, M Bezabih, P de Rijk, CJ Meehan, …; Infection, Genetics and Evolution; 55, 251-259; 2017
- Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum; B Ofori-Anyinam, G Dolganov, T Van, JL Davis, ND Walter, BJ Garcia, …; Tuberculosis; 104, 58-64; 2017
- Bacterial diversity in Buruli ulcer skin lesions: Challenges in the clinical microbiome analysis of a skin disease; C Van Leuvenhaege, K Vandelannoote, D Affolabi, F Portaels, G Sopoh, …; PloS one; 12 (7), e0181994; 2017
- Tuberculosis resistance-conferring mutations with fitness cost among HIV-positive individuals in Uganda; W Ssengooba, D Lukoye, CJ Meehan, DP Kateete, ML Joloba, …; The International Journal of Tuberculosis and Lung Disease; 21 (5), 531-536; 2017
2016
- Unexpected high prevalence of resistance-associated Rv0678 variants in MDR-TB patients without documented prior use of clofazimine or bedaquiline; C Villellas, N Coeck, CJ Meehan, N Lounis, B de Jong, L Rigouts, …; Journal of Antimicrobial Chemotherapy; 72 (3), 684-690; 2016
- Diagnosis of bacterial bloodstream infections: a 16S metagenomics approach; S Decuypere, CJ Meehan, S Van Puyvelde, T De Block, J Maltha, …; PLoS Negl Trop Dis; 10 (2), e0004470; 2016
- Whole genome sequencing to complement tuberculosis drug resistance surveys in Uganda; W Ssengooba, CJ Meehan, D Lukoye, GW Kasule, K Musisi, ML Joloba, …; Infection, Genetics and Evolution; 40, 8-16; 2016
- Characterizing the syphilis-causing Treponema pallidum ssp. pallidum proteome using complementary mass spectrometry; KK Osbak, S Houston, KV Lithgow, CJ Meehan, M Strouhal, D ≈†majs, …; PLoS neglected tropical diseases; 10 (9), e0004988; 2016
- Apolipoprotein L1 variant associated with increased susceptibility to trypanosome infection; B Cuypers, L Lecordier, CJ Meehan, F Van den Broeck, H Imamura, …; mBio; 7 (2), e02198-15; 2016
- Whole genome sequencing reveals mycobacterial microevolution among concurrent isolates from sputum and blood in HIV infected TB patients; W Ssengooba, BC de Jong, ML Joloba, FG Cobelens, CJ Meehan; BMC infectious diseases; 16 (1), 371; 2016
- Discovery of an expanded set of avian leukosis subgroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline; K Rutherford, CJ Meehan, MGI Langille, SG Tyack, JC McKay, …; Poultry science; 95 (10), 2250-2258; 2016
2015
- Specific gyrA gene mutations predict poor treatment outcome in MDR-TB; L Rigouts, N Coeck, M Gumusboga, WB de Rijk, KJM Aung, MA Hossain, …; Journal of Antimicrobial Chemotherapy; 71 (2), 314-323; 2015
- Characterizing the diverse mutational pathways associated with R5-tropic maraviroc resistance: HIV-1 that uses the drug-bound CCR5 coreceptor; X Jiang, F Feyertag, CJ Meehan, GP McCormack, SA Travers, C Craig, …; Journal of virology; 89 (22), 11457-11472; 2015
- Frailty and the Microbiome; CJ Meehan, MGI Langille, RG Beiko; Frailty in Aging; 41, 54-65; 2015
- A genomic approach to resolving relapse versus reinfection among four cases of Buruli ulcer; M Eddyani, K Vandelannoote, CJ Meehan, S Bhuju, JL Porter, J Aguiar, …; PLoS neglected tropical diseases; 9 (11), e0004158; 2015
2014
- A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria; CJ Meehan, RG Beiko; Genome Biology and Evolution; 6 (3), 703-713; 2014
- Microbial shifts in the aging mouse gut; MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, …; Microbiome; 2 (1), 50; 2014
- Interactions in the microbiome: communities of organisms and communities of genes; E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko, …; FEMS microbiology reviews; 38 (1), 90-118; 2014
2013
2012
- The evolution of the class A scavenger receptors; FJ Whelan, CJ Meehan, GB Golding, BJ McConkey, DME Bowdish; BMC evolutionary biology; 12 (1), 227; 2012
- Lateral gene transfer of an ABC transporter complex between major constituents of the human gut microbiome; CJ Meehan, RG Beiko; BMC microbiology; 12 (1), 248; 2012
- Human microbiome: a genetic bazaar for microbes?; MGI Langille, CJ Meehan, RG Beiko; Current Biology; 22 (1), R20-R22; 2012
2010